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1. Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2

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Author:
Forstmeier, Peter
Title:
Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
SARS-CoV-2
RNA
pseudoknots
SNPs
RNA structure conservation
frameshifting element
FSE
File:
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Teh-Hui Kao, Thesis Honors Advisor

2. 1. Characterization of Twisters Ribozymes at Splice Sites 2. Development of a Computational Pipeline to Discover Small Self-cleaving Ribozymes with Helical Imperfections

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Restricted (Penn State Only)
Author:
Chang, Benjamin
Title:
1. Characterization of Twisters Ribozymes at Splice Sites 2. Development of a Computational Pipeline to Discover Small Self-cleaving Ribozymes with Helical Imperfections
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
RNA
Ribozymes
Splicing
High-throughput Pipeline
File:
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Joseph C. Reese, Thesis Honors Advisor

3. Thermodynamic Parameters of Non-Watson-Crick Base Paired Structures in In-vitro and In-Vivo-Like Conditions

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Restricted (Penn State Only)
Author:
Winemiller, Atlas
Title:
Thermodynamic Parameters of Non-Watson-Crick Base Paired Structures in In-vitro and In-Vivo-Like Conditions
Area of Honors:
Chemistry
Keywords:
RNA
thermodynamics
non-Watson-Crick
in vivo-like
File:
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Stewart Anthony Mallory, Thesis Honors Advisor
Elizabeth A Jolley, Faculty Reader