1. Genome-Metagenome Similarity Graph: a Novel Data Structure for Containment-Based Metagenome Comparison Open Access Author: Thomas, Isaac Title: Genome-Metagenome Similarity Graph: a Novel Data Structure for Containment-Based Metagenome Comparison Area of Honors: Computer Science Keywords: MetagenomicsBioinformaticsMathematicsComputer ScienceMetagenomic Similarity File: Download SHCThesis_IsaacThomas_Final.pdf Thesis Supervisors: David Koslicki, Thesis SupervisorJohn Joseph Hannan, Thesis Honors Advisor
2. An Enhancer-Based Deep Learning Approach for Studying Viral Regulation Open Access Author: Cooper, Rachel Title: An Enhancer-Based Deep Learning Approach for Studying Viral Regulation Area of Honors: Computer Science Keywords: Deep LearningBioinformaticsGene RegulationEnhancersVirusHSV-1 File: Download Cooper_Rachel_An_Enhancer-Based_Deep_Learning_Approach_For_Studying_Viral_Regulation.pdf Thesis Supervisors: Shaun Mahony, Thesis SupervisorJohn Joseph Hannan, Thesis Honors Advisor
3. Cross-Species Prediction of Transcription Factor Binding Restricted (Penn State Only) Author: Agarwala, Vandana Title: Cross-Species Prediction of Transcription Factor Binding Area of Honors: Computer Science Keywords: Gene RegulationDeep LearningTransfer LearningDomain AdaptationComputational BiologyBioinformaticsMachine Learning File: Login to Download Thesis Supervisors: Shaun Mahony, Thesis SupervisorJohn Joseph Hannan, Thesis Honors Advisor
