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Start Over Area of Honors Biochemistry and Molecular Biology Degree B S Access Level restricted_to_institution

1. The Mechanism of NELF Recruitment by DSIF in Promoter-proximal Pausing of RNA Polymerase II

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Author:
Deng, Eilene
Title:
The Mechanism of NELF Recruitment by DSIF in Promoter-proximal Pausing of RNA Polymerase II
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
promoter-proximal pausing
transcription factors
gene regulation
DSIF
NELF
RNA Polymerase II
File:
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Thesis Supervisors:
David Scott Gilmour, Thesis Supervisor
Lorraine C Santy, Thesis Honors Advisor

3. The Effect of the Small RNA RyhB on the Structure of its mRNA Targets

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Author:
Grecco, Samantha
Title:
The Effect of the Small RNA RyhB on the Structure of its mRNA Targets
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
sRNA
RyhB
gene expression profiling
in vivo chemical structure probing
pulldown assay
antibiotic resistance
structure-function relationship
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Ying Gu, Thesis Honors Advisor

5. The Chemotherapeutic Agent CX-5461 Affects Cell Viability Through a Topoisomerase II Poison-Like Mechanism

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Author:
Dennis, Kady
Title:
The Chemotherapeutic Agent CX-5461 Affects Cell Viability Through a Topoisomerase II Poison-Like Mechanism
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
CX-5461
mechanism of action
RNA Polymerase I inhibitor
Topoisomerase II poison
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Thesis Supervisors:
Justin R Pritchard, Thesis Supervisor
Joseph C. Reese, Thesis Honors Advisor

6. Understanding the Mechanisms Controlling the Localization of Microtubule Organization Proteins in Drosophila Neurons

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Author:
Long, Melissa
Title:
Understanding the Mechanisms Controlling the Localization of Microtubule Organization Proteins in Drosophila Neurons
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
Drosophila
Neuroscience
Microtubule Nucleation
Clathrin-Mediated Endocytosis
Wnt Signaling
Dendrite
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Thesis Supervisors:
Melissa Rolls, Thesis Supervisor
David Scott Gilmour, Thesis Honors Advisor

7. Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2

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Author:
Forstmeier, Peter
Title:
Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
SARS-CoV-2
RNA
pseudoknots
SNPs
RNA structure conservation
frameshifting element
FSE
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Teh-Hui Kao, Thesis Honors Advisor

9. High Resolution Structure and Neutralization Mechanism of 1G1 Fab Bound to Poliovirus Type 3

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Author:
Faust, Julia
Title:
High Resolution Structure and Neutralization Mechanism of 1G1 Fab Bound to Poliovirus Type 3
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
CryoEM
poliovirus
SPV3
virology
neutralizing antibody
1G1 Fab
structural biology
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Thesis Supervisors:
Susan Hafenstein, Thesis Supervisor
Timothy Charles Meredith, Thesis Honors Advisor

10. Cost-effective Molecular Weight Standards for Protein Size-exclusion Chromatography: HISftnA and HISDps Expression and Purification

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Author:
Howells, Joshua
Title:
Cost-effective Molecular Weight Standards for Protein Size-exclusion Chromatography: HISftnA and HISDps Expression and Purification
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
Size-exclusion chromatography
molecular weight standards
Escherichia coli bacterial ferritin
Escherichia coli DNA-binding protein from starved cells
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Thesis Supervisors:
Song Tan, Thesis Supervisor
Song Tan, Thesis Honors Advisor
Jean-Paul Armache, Faculty Reader