1. LOOP DYNAMICS IN THE FUNCTION OF E. COLI INDOLE GLYCEROL PHOSPHATE SYNTHASE Open Access Author: Padaki, Ajay Shridar Title: LOOP DYNAMICS IN THE FUNCTION OF E. COLI INDOLE GLYCEROL PHOSPHATE SYNTHASE Area of Honors: Chemistry Keywords: Enzyme Kinetics File: Download FinalHonorsThesis.pdf Thesis Supervisors: David D Boehr, Thesis SupervisorDavid D Boehr, Thesis SupervisorScott Trent Feldman, Thesis Honors AdvisorHoward M Salis, Faculty Reader
2. Effects of Synonymous, Consecutive, Repetitive Codons on Bacterial Translation Elongation Rates Open Access Author: Heasley, Victoria Lynn Title: Effects of Synonymous, Consecutive, Repetitive Codons on Bacterial Translation Elongation Rates Area of Honors: Bioengineering Keywords: repetitive codon sequences elongationaffects on translation elongation ratessynthetic biologygenetic engineering File: Download Heasley_Victoria__Effects_of_Repetitive_Codons_on_Elongation.pdf Thesis Supervisors: Howard M Salis, Thesis SupervisorDr. William O Hancock, Thesis Honors AdvisorPeter J Butler, Faculty Reader
3. Determining the Ribosome Binding Footprint in Escherichia Coli to Improve the Ribosome Binding Site Calculator Model of Translation Initiation Open Access Author: Smith, Ashlee Elizabeth Title: Determining the Ribosome Binding Footprint in Escherichia Coli to Improve the Ribosome Binding Site Calculator Model of Translation Initiation Area of Honors: Chemical Engineering Keywords: ribosomebindingmodelsitetranslationinitiationengineeringRBScalculator File: Download Ashlee_Smith_-_SHC_Thesis_Fall_2014.pdf Thesis Supervisors: Howard M Salis, Thesis SupervisorDr. Themis Matsoukas, Thesis Honors Advisor
4. Rapid Automated Optimization of Riboswitch Function for Synthetic Biology Open Access Author: Huso, Walker D Title: Rapid Automated Optimization of Riboswitch Function for Synthetic Biology Area of Honors: Chemical Engineering Keywords: RiboswitchriboswitchesaptameraptamersDNTdinitrotolueneTNTtrinitrotoluenein vivosensorautomatedbiophysical File: Download Huso_Walker_RapidOptimizationofRiboswitches.pdf Thesis Supervisors: Howard M Salis, Thesis SupervisorAli Borhan, Thesis Honors Advisor
5. Effect of Codon Optimization on Bacterial Translation Elongation Rates Open Access Author: Swackhamer, Clay Dale Title: Effect of Codon Optimization on Bacterial Translation Elongation Rates Area of Honors: Agricultural and Biological Engineering Keywords: Clay Swackhamer Salis Synthetic Biology Biological Engineering C File: Download Swackhamer_Clay_Effect_of_Codon_Optimization_on_Bacterial_Translation_Elongation_Rates.pdf Thesis Supervisors: Howard M Salis, Thesis SupervisorAli Demirci, Thesis Honors Advisor
6. Engineering transcriptional logic within bacteria using complex, modular, CRISPRi circuit arrays Restricted (Penn State Only) Author: Roggenbaum, Morgan Title: Engineering transcriptional logic within bacteria using complex, modular, CRISPRi circuit arrays Area of Honors: Biological Engineering Keywords: synthetic biologygenetic circuitsCRISPRitranscriptional read-through File: Login to Download Thesis Supervisors: Howard M Salis, Thesis SupervisorAli Demirci, Thesis Honors Advisor