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13. 1. Characterization of Twisters Ribozymes at Splice Sites 2. Development of a Computational Pipeline to Discover Small Self-cleaving Ribozymes with Helical Imperfections

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Restricted (Penn State Only)
Author:
Chang, Benjamin
Title:
1. Characterization of Twisters Ribozymes at Splice Sites 2. Development of a Computational Pipeline to Discover Small Self-cleaving Ribozymes with Helical Imperfections
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
RNA
Ribozymes
Splicing
High-throughput Pipeline
File:
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Joseph C. Reese, Thesis Honors Advisor

14. Exploring the Specialization of Expansion Segments in Stage-Specific Plasmodium Ribosomes

open_access
Open Access
Author:
Wardeh, Leena
Title:
Exploring the Specialization of Expansion Segments in Stage-Specific Plasmodium Ribosomes
Area of Honors:
Biology
Keywords:
malaria
parasites
parasitology
molecular biology
ribosomes
ribosomal specialization
expansion segments
Leena Wardeh
Scott Lindner
James McGee
Allen Minns
RNA
DNA
RNA probes
polyacrylamide gel
transcription
translation
electroelution
biotinylation
sequencing
EMSA
File:
Download Exploring_the_Specialization_of_Expansion_Segments_in___Temporally_Expressed_Plasmodium_Ribosomes_-_Leena_Wardeh_s_Schreyer_Honors_College_Thesis_Spring_2024.pdf
Thesis Supervisors:
Scott E. Lindner, Thesis Supervisor
Timothy J Jegla, Thesis Honors Advisor

15. Thermodynamic Parameters of Non-Watson-Crick Base Paired Structures in In-vitro and In-Vivo-Like Conditions

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Restricted (Penn State Only)
Author:
Winemiller, Atlas
Title:
Thermodynamic Parameters of Non-Watson-Crick Base Paired Structures in In-vitro and In-Vivo-Like Conditions
Area of Honors:
Chemistry
Keywords:
RNA
thermodynamics
non-Watson-Crick
in vivo-like
File:
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Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Stewart Anthony Mallory, Thesis Honors Advisor
Elizabeth A Jolley, Faculty Reader

16. Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2

open_access
Open Access
Author:
Forstmeier, Peter
Title:
Development of a Functional RNA-Identifying Computational Pipeline and its Application to SARS-CoV-2
Area of Honors:
Biochemistry and Molecular Biology
Keywords:
SARS-CoV-2
RNA
pseudoknots
SNPs
RNA structure conservation
frameshifting element
FSE
File:
Download Forstmeier_Thesis_2022_final_revised.pdf
Thesis Supervisors:
Philip C Bevilacqua, Thesis Supervisor
Teh-Hui Kao, Thesis Honors Advisor