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Author:

Dong, Emily Rae

Title:

Integrated Analysis of RNA-RNA Interactions for the Rational Design of Synthetic Metabolic Regulators

Area of Honors:

Chemical Engineering

Keywords:

RNA
Regulatory RNA
Synthetic Biology
Metabolic Engineering

File:

Download Dong_Emily_Honors_Thesis.pdf

Thesis Supervisors:

Dr. Howard M Salis, Thesis Supervisor
Darrell Velegol, Thesis Honors Advisor

Author:

Ahluwalia, Amarpreet Kaur

Title:

A Computational and Experimental Approach to the Analysis of Ionized Nucleobases

Area of Honors:

Chemistry

Keywords:

RNA Catalysis
pKa shifting
Ionized Nucleobase
Nucleobase
RNA

File:

Download Thesis_Final_Submit_Reduced.pdf

Thesis Supervisors:

Philip C. Bevilacqua, Thesis Supervisor
Chen Pei David Tu, Thesis Honors Advisor
Kenneth S Feldman, Faculty Reader

Author:

Luteran, Emily Michelle

Title:

Investigating the Folding of the Class I Type II PreQ1 Riboswitch in Cellular Conditions

Area of Honors:

Chemistry

Keywords:

preQ1
riboswitch
RNA
folding
cellular conditions

File:

Download Emily_Luteran_Thesis_Final.pdf

Thesis Supervisors:

Philip C. Bevilacqua, Thesis Supervisor
Raymond Lee Funk, Thesis Honors Advisor
Scott A Showalter, Faculty Reader
Xin Zhang, Faculty Reader

Author:

Evans, Declan Marshall

Title:

Biophysical Characterization of TRBP and Pdx1

Area of Honors:

Biochemistry and Molecular Biology

Keywords:

RNA
IDP
TRBP
Pdx1

File:

Download Declan_Evans_Thesis.pdf

Thesis Supervisors:

Scott A Showalter, Thesis Supervisor
Dr. Wendy Hanna-Rose, Thesis Honors Advisor

Author:

Anmangandla, Ananya

Title:

Investigation and Structural Analysis of Innate Immune Sensor PKR Activation by the Clostridia Bolteae Twister Ribozyme

Area of Honors:

Chemistry

Keywords:

RNA
Ribozyme
PKR
Protein Kinase R
Innate Immunity
Biochemistry
Chemistry
Functional RNAs
Twister Ribozyme

File:

Download AAnmangandla_UGThesis2017__1_.pdf

Thesis Supervisors:

Philip C. Bevilacqua, Thesis Supervisor
Raymond Lee Funk, Thesis Honors Advisor

Author:

Bogale, Kaleb Tadesse

Title:

THE IMPACT OF ENDOGENOUS RETROVIRUS S2220 ON MULE DEER ISY1 GENE EXPRESSION

Area of Honors:

Biology

Keywords:

Endogenous retrovirus
ERV
LTR
long terminal repeat
solo LTR
solo long terminal repeat
gene expression
mule deer
Odocoileus hemionus
RNA
Splicing
retrovirus
pre-mrna splicing gene
ISY1 gene
isy1
gene regulation
hardy-weinberg equilibrium
population genetics
Bos taurus
domestic cow
Ovis aris
sheep

File:

Download KalebBogale_ThesisFinal.pdf

Thesis Supervisors:

Dr. Mary Poss, Thesis Supervisor
Dr. Bernhard Lüscher, Thesis Honors Advisor

Author:

Berman, Scott W

Title:

FLUX-DEPENDENT TRANSMISSION OF RNA THROUGH ULTRAFILTRATION MEMBRANES

Area of Honors:

Chemical Engineering

Keywords:

ultrafiltration
RNA
membrane
transmission
RNA ultrafiltration
Biomax
Durapore
concentration polarization

File:

Download Berman_Thesis.pdf

Thesis Supervisors:

Andrew Zydney, Thesis Supervisor
Dr. Michael John Janik, Thesis Honors Advisor

Author:

Tracey, Matthew Allan

Title:

Small Oligonucleotide Models of the Twister Ribozyme Active Site

Area of Honors:

Biochemistry and Molecular Biology

Keywords:

RNA
Ribozyme
Twister
Chemistry
Biochemistry
Twister Ribozyme
RNA Catalysis

File:

Download Tracey_Matthew_ModelsForTwister.pdf

Thesis Supervisors:

Philip C. Bevilacqua, Thesis Supervisor
Dr. Teh-hui Kao, Thesis Honors Advisor

Author:

Khan, Fatima Mahmood

Title:

Identification of differentially expressed long non-coding RNAs in a model of neuron differentiation

Area of Honors:

Biology

Keywords:

biology
bioinformatics
genetics
RNA

File:

Download Khan_Thesis_Draft_FINAL.pdf

Thesis Supervisors:

Nikolaos Tsotakos, Thesis Supervisor
Sairam V Rudrabhatla, Thesis Honors Advisor

Author:

Bormes, Katie

Title:

Functional Significance of RNA Secondary Structure in an RNA Thermometer From Bradyrhizobium Japonicum

Area of Honors:

Chemistry

Keywords:

ROSE elements
RNA
Secondary Structure

File:

Download Bormes_KM_2020_Thesis.pdf

Thesis Supervisors:

Philip C Bevilacqua, Thesis Supervisor
Przemyslaw Maslak, Thesis Honors Advisor