1. A COMPUTATIONAL COMPARISON OF GENOME-SCALE METABOLIC MODELS HIGHLIGHTING THE NEED FOR THE ADOPTION OF UNIVERSAL CONVENTIONS AND STANDARDS Open Access Author: Spagnol, Stephen Thomas Title: A COMPUTATIONAL COMPARISON OF GENOME-SCALE METABOLIC MODELS HIGHLIGHTING THE NEED FOR THE ADOPTION OF UNIVERSAL CONVENTIONS AND STANDARDS Area of Honors: Chemical Engineering Keywords: genome-scale metabolic modelmetabolic engineeringgenomegenome-scalemetabolic modelmetabolic reconstructionstrain optimizationgap filling File: Download Stephen_Spagnol_Finalized_Schreyer_Honors_Thesis_for_Submission.pdf Thesis Supervisors: Costas D Maranas, Thesis SupervisorCostas D Maranas, Thesis SupervisorThemis Matsoukas, Thesis Honors AdvisorAndrew Zydney, Faculty Reader
2. Development And Application Of The Annotation Integration Method For Developing Genome-scale Models Open Access Author: Mueller, Thomas J Title: Development And Application Of The Annotation Integration Method For Developing Genome-scale Models Area of Honors: Chemical Engineering Keywords: genome-scale reconstructionmetabolic model File: Download Tom_Mueller_Thesis.pdf Thesis Supervisors: Costas D Maranas, Thesis SupervisorAli Borhan, Thesis Honors Advisor
3. DE NOVO DESIGN THROUGH OPTMAVEN AND CURRENT ADVANCEMENTS IN ITS DESIGN, BENCHMARKED BY THE ZIKA VIRUS Open Access Author: Paulus, Jordan George Title: DE NOVO DESIGN THROUGH OPTMAVEN AND CURRENT ADVANCEMENTS IN ITS DESIGN, BENCHMARKED BY THE ZIKA VIRUS Area of Honors: Chemical Engineering Keywords: OptMAVEnantibodycomputationalde novo designIPROMILPOptCDRMAPs File: Download Jordan_Paulus_Final_Thesis_Submission.pdf Thesis Supervisors: Costas D Maranas, Thesis SupervisorDr. Themis Matsoukas, Thesis Honors Advisor
4. Quick optmaven: an efficient computational framework for the de novo design of fully human monoclonal antibodies Open Access Author: Allan, Matthew Frederick Title: Quick optmaven: an efficient computational framework for the de novo design of fully human monoclonal antibodies Area of Honors: Chemical Engineering Keywords: monoclonal antibodymAbmAbsprotein designantibody designprotein engineeringantibody engineeringantibody developmentimmunologycomputational biologybioinformaticsIPROOptMAVEnOptCDRpharmaceuticalsbiologics File: Download Allan_Honors_Thesis.pdf Thesis Supervisors: Costas D Maranas, Thesis SupervisorAndrew Zydney, Thesis Honors Advisor
