1. Assessment of Nucleosomal Binding using a High-throughput Interactions by Fluorescent Intensity Assay Open Access Author: Cognetti, Daniel Joseph Title: Assessment of Nucleosomal Binding using a High-throughput Interactions by Fluorescent Intensity Assay Area of Honors: Biochemistry and Molecular Biology Keywords: Gene regulationEpigeneticChromatinNucleosomeHI-FIRCC1RanHistoneBiochemistry File: Download Cognetti_Daniel_Assessment.pdf Thesis Supervisors: Song Tan, Thesis SupervisorDavid Scott Gilmour, Thesis Honors Advisor
2. Visualizing and Understanding Chromatin Interactions Using Self-Organizing Maps Open Access Author: Kunz, TImothy Robert Title: Visualizing and Understanding Chromatin Interactions Using Self-Organizing Maps Area of Honors: Biochemistry and Molecular Biology Keywords: SOMSelf-Organizing MapsHi-CChromatinnuclear structure File: Download Kunz_Tim_HiCSOM_b.pdf Thesis Supervisors: Shaun Mahony, Thesis SupervisorDr. Lorraine C Santy, Thesis Honors Advisor
3. THE EFFECTS OF INTERNAL HISTONE H3 TRUNCATIONS ON LSD1/COREST DEMETHYLASE ACTIVITY Open Access Author: Johnston, James Lakshman Title: THE EFFECTS OF INTERNAL HISTONE H3 TRUNCATIONS ON LSD1/COREST DEMETHYLASE ACTIVITY Area of Honors: Biochemistry and Molecular Biology Keywords: JamesJohnstonJames JohnstonLakshmanLSD1CoRESTHistoneChromatinH3TruncationsStructureNucleosome File: Download JamesJohnstonThesisFinalFixed.pdf Thesis Supervisors: Song Tan, Thesis SupervisorDr. Teh-hui Kao, Thesis Honors AdvisorScott Brian Selleck, Faculty Reader
4. Identifying an MNase Sensitive Particle associated with Rap1 Restricted (Penn State Only) Author: Pitts, Cass Title: Identifying an MNase Sensitive Particle associated with Rap1 Area of Honors: Biochemistry and Molecular Biology Keywords: ChromatinNucleosome displacing factorsRap1SAGABudding yeastGene regulation File: Login to Download Thesis Supervisors: Lu Bai, Thesis SupervisorJoseph C. Reese, Thesis Honors Advisor
5. Purification and Characterization of Chromatin Remodeler SNF2L Restricted (Penn State Only) Author: Waldt, Hannah Title: Purification and Characterization of Chromatin Remodeler SNF2L Area of Honors: Biochemistry and Molecular Biology Keywords: BiochemistryStructural BiologyChromatinISWISNF2LNegative Stain EMCryo-EM File: Login to Download Thesis Supervisors: Jean-Paul Armache, Thesis SupervisorSanthosh Girirajan, Thesis Honors Advisor