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Author:

Allan, Matthew Frederick

Title:

Quick optmaven: an efficient computational framework for the de novo design of fully human monoclonal antibodies

Area of Honors:

Chemical Engineering

Keywords:

monoclonal antibody
mAb
mAbs
protein design
antibody design
protein engineering
antibody engineering
antibody development
immunology
computational biology
bioinformatics
IPRO
OptMAVEn
OptCDR
pharmaceuticals
biologics

File:

Download Allan_Honors_Thesis.pdf

Thesis Supervisors:

Costas D Maranas, Thesis Supervisor
Andrew Zydney, Thesis Honors Advisor

Author:

Wang, Luxin

Title:

Detecting Deferentially Interacting Region from HiC Data

Area of Honors:

Statistics

Keywords:

Hi-C
Statistics
genetics
bioinformatics

File:

Download thesis_final.pdf

Thesis Supervisors:

Qunhua Li, Thesis Supervisor
David Russell Hunter, Thesis Honors Advisor

Author:

Khan, Fatima Mahmood

Title:

Identification of differentially expressed long non-coding RNAs in a model of neuron differentiation

Area of Honors:

Biology

Keywords:

biology
bioinformatics
genetics
RNA

File:

Download Khan_Thesis_Draft_FINAL.pdf

Thesis Supervisors:

Nikolaos Tsotakos, Thesis Supervisor
Sairam V Rudrabhatla, Thesis Honors Advisor

Author:

Jordache, Lydia

Title:

A Bioinformatic Analysis of Globin-Coupled Sensor Signalling in Pectobacterium Carotovorum

Area of Honors:

Microbiology

Keywords:

Oxygen sensing
oxygen-sensing
bacteria
GCS
c-di-GMP
Globin-coupled Sensor
Pectobacteria
soft-rot
motility
biofilm
bioinformatics
DGC
Genome Neighborhood Analysis
Sequence Conservation Analysis
Molecular modeling

File:

Download Jordache_Final_Thesis.pdf

Thesis Supervisors:

Emily E Weinert, Thesis Supervisor
Lorraine C Santy, Thesis Honors Advisor

Author:

Prince, Cassidy R

Title:

Genetic biomarkers of Bacillus cereus sensu stricto cytotoxicity in a CaCo-2 model

Area of Honors:

Microbiology

Keywords:

bacillus cereus
enterotoxins
cytotoxicity
bioinformatics

File:

Download Prince_Honors_Thesis_Final.pdf

Thesis Supervisors:

Jasna Kovac, Thesis Supervisor
Ying Gu, Thesis Honors Advisor

Author:

Fehlman, Mikhyle

Title:

Phylogeny of Mating Type Locus in The Fusarium oxysporum Species Complex

Area of Honors:

Plant Sciences

Keywords:

mycology
taxonomy
bioinformatics
genetics

File:

Download MF_MAT_thesis.pdf

Thesis Supervisors:

David Michael Geiser, Thesis Supervisor
Dennis R Decoteau, Thesis Honors Advisor

Author:

Goubet-Mc Call, Leo

Title:

Investigating a Mysterious Retention of Photosynthesis in the Parasitic Plant Cuscuta gronovii

Area of Honors:

Biology

Keywords:

parasitic plants
cuscuta
gene expression
stable isotopes
plant biology
RuBisCO
photosynthesis
bioinformatics
transcriptome
genome
differential expression

File:

Download Goubet-McCall_Leo_PhotosynthesisRetentionCuscuta.pdf

Thesis Supervisors:

Claude Walker Depamphilis, Thesis Supervisor
James Harold Marden, Thesis Honors Advisor
Tomas A Carlo-Joglar, Faculty Reader